interaction data visualization tool

PIMRider® is Hybrigenics' functional proteomics software platform, dedicated to the exploration of Protein Interaction Maps (PIM).Fed by our reliable interaction data, PIMRider allows the exploration of biological functions and the understanding of pathways.

It integrates 4 viewers: for more details, select the viewer on the right panel or download the leaflet.

Access to the interaction data through the PIMRider software under special conditions.

This tool is not included into the standard screening service:
please contact us to discuss access conditions.



 

Protein Viewer® - Browse proteins and annotations

> Advanced search engine: selection of protein entry point
   using various filters and keywords

> Functional and structural annotations: description, aliases,
   function, localization, links to bibliographic and external
   databases, protein sequence and genomic information

> List of interacting proteins: interactions scored with PBS, our
   proprietary confidence score.

PIM Viewer® - Ride the interaction network

> Graphical PIM display: different graph layouts,
   expand/hide and path search functions

> Multiple-PIM display: for comparative proteomics

> Filtering options: by PBS, proteome, library, subcellular
   localization, function

> Import/export: save, load, and print graph options

Interaction Viewer® - Review details of experimental data

> Bait domain definition: relative position in the bait protein

> Detailed list of selected prey fragments: positions, clone
   identifiers, experimental and theoretical 5' and 3' sequences

> Definition of SID: interacting region common to all selected
   prey fragments.

Domain Viewer® - Compare interacting and functional domains

> Domain mapping: graphical view of experimental binding
   domains (bait and SID), structural domains (signal
   peptides, transmembrane segments, coiled-coil regions,
   secondary structures), and functional domains (InterPro)

> Filtering options: by PBS, domain type or PIM

> Sorting options: by PBS, protein name or protein size.